wikipathways-collection

WikiPathways WP399

• WikiPathways: WP399 (classic)
• Species: Homo sapiens
• Scholia: WP399

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 95
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .x we found 1 problem(s):
    • Pathways of which the description may contain MediaWiki-style links: 1
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 95

http://classic.wikipathways.org/instance/WP399_r136862 LRP5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCQ with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2CB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 TCF7L1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCE with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CD44 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT10B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R2A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CCND1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT7B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PAFAH1B1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R2B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 NLK with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT5A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R5C with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT10A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 NKD2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCB1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R1B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCZ with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 GSK3B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CTBP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CTBP2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FBXW2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 P300 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKD1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCI with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 DVL2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 RHOA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 APC with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 RACGAP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 MAP3K7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT16 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R3A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 AXIN1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 ESRRB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPARD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CTNND1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 ZBTB33 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 NANOG with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FRAT1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 MMP7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 NKD1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 POU5F1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 TP53 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2CA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CTNNB1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 LRP6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT3A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R1A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT11 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CBP with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CSNK1E with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 JUN with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT9B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT2B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD8 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 Prkcc with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD9 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R2C with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FZD6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PRKCH with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 LRRK2-mut with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 DVL3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 DVL1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 SOX2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT5B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT7A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R5E with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PLAU with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 FOSL1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 MAPK9 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 AXIN2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 MAPK10 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CCND2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 CCND3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 LDLR with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 PPP2R3B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 MYC with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 MAP2K4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 WNT4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP399_r136862 LEF1 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

PathwayTests.mediawikiLinks

Pathways of which the description may contain MediaWiki-style links: 1

[["homepage"],
["http://classic.wikipathways.org/instance/WP399_r136862"]
]