wikipathways-collection

WikiPathways WP3967

• WikiPathways: WP3967 (classic)
• Species: Homo sapiens
• Scholia: WP3967

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Interactions with Labels

Interactions found that involve Labels: 5

• http://classic.wikipathways.org/instance/WP3967_r108139 “Cytoskeleton” with graphId f8656
• http://classic.wikipathways.org/instance/WP3967_r108139 “Connectors signal transducers” with graphId a6456
• http://classic.wikipathways.org/instance/WP3967_r108139 “Receptors” with graphId e262f
• http://classic.wikipathways.org/instance/WP3967_r108139 “Extracellular matrix ligands” with graphId ed1f0
• http://classic.wikipathways.org/instance/WP3967_r108139 “ECM” with graphId d33d1

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 2

• http://classic.wikipathways.org/instance/WP3967_r108139 http://rdf.wikipathways.org/Pathway/WP3967_r108139/WP/Interaction/id59f6020d_2 “YAP1” (https://identifiers.org/ensembl/ENSG00000137693) and YAP1” (https://identifiers.org/ensembl/ENSG00000137693)
• http://classic.wikipathways.org/instance/WP3967_r108139 http://rdf.wikipathways.org/Pathway/WP3967_r108139/WP/Interaction/id59f6020d_1 “YAP1” (https://identifiers.org/ensembl/ENSG00000137693) and YAP1” (https://identifiers.org/ensembl/ENSG00000137693)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations