wikipathways-collection

WikiPathways WP3916

• WikiPathways: WP3916 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 55
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/DataNode/ac5b7 (Diacylglycerol Synthesis)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/DataNode/d2bf3 (Fatty Acid Synthesis)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/DataNode/d0a12 (Glycogen Metabolism)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/DataNode/d8fe7 (Neutral lipid Synthesis

Lipid Droplets)

• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/DataNode/b92e7 (Pentose Phosphate Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 55

• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/e7223 “Pyruvate” (https://identifiers.org/hmdb/HMDB0000243) and Pyruvate” (https://identifiers.org/hmdb/HMDB0000243)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/c6385_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Malate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/a0a1a_1 “Citrate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Aspartate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Malate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Aspartate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Malate” (https://identifiers.org/cas/6915-15-7)
• http://classic.wikipathways.org/instance/WP3916_r123359 http://rdf.wikipathways.org/Pathway/WP3916_r123359/WP/Interaction/id48e4d9fd_2 “Citrate” (https://identifiers.org/cas/6915-15-7) and Citrate” (https://identifiers.org/cas/6915-15-7)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations