wikipathways-collection

WikiPathways WP3888

• WikiPathways: WP3888 (classic)
• Species: Homo sapiens
• Scholia: WP3888

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 60
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3

http://classic.wikipathways.org/instance/WP3888_r126337 HSP90AB2P with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP3888_r126337 RPL39P5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP3888_r126337 AKAP2 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 60

• http://classic.wikipathways.org/instance/WP3888_r126337 “Stress fibre formation” with graphId cfcbd
• http://classic.wikipathways.org/instance/WP3888_r126337 “Endothelial cell survival” with graphId edb6d
• http://classic.wikipathways.org/instance/WP3888_r126337 “PM” with graphId b056d
• http://classic.wikipathways.org/instance/WP3888_r126337 “EN” with graphId f7ac5
• http://classic.wikipathways.org/instance/WP3888_r126337 “Angiogenesis” with graphId a162c
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId d5234
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId f3c38
• http://classic.wikipathways.org/instance/WP3888_r126337 “VEGFR2 recycling” with graphId d8070
• http://classic.wikipathways.org/instance/WP3888_r126337 “Endothelial cell Proliferation and migration” with graphId e89e2
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId b1f7b
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId ebeb4
• http://classic.wikipathways.org/instance/WP3888_r126337 “Cell migration and invasion” with graphId b94cf
• http://classic.wikipathways.org/instance/WP3888_r126337 “Vascular permeability” with graphId d9369
• http://classic.wikipathways.org/instance/WP3888_r126337 “Ligand” with graphId c46b9
• http://classic.wikipathways.org/instance/WP3888_r126337 “EC Migration and Tube Formation” with graphId d95f6
• http://classic.wikipathways.org/instance/WP3888_r126337 “Endothelial cell survival” with graphId dd3c9
• http://classic.wikipathways.org/instance/WP3888_r126337 “Stimulation of tip cell filopodia” with graphId a0717
• http://classic.wikipathways.org/instance/WP3888_r126337 “Regulation of cell survival” with graphId ededf
• http://classic.wikipathways.org/instance/WP3888_r126337 “Regulation of endothelial cell sprouting” with graphId eac72
• http://classic.wikipathways.org/instance/WP3888_r126337 “Receptor” with graphId a771a
• http://classic.wikipathways.org/instance/WP3888_r126337 “Focal adhesion assembly and cell migration” with graphId af62f
• http://classic.wikipathways.org/instance/WP3888_r126337 “VE Cadherin recycling” with graphId e438e
• http://classic.wikipathways.org/instance/WP3888_r126337 “EC proliferation, migration, tube formation and angiogenesis” with graphId c4eb3
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId c0b7f
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId a7ba0
• http://classic.wikipathways.org/instance/WP3888_r126337 “Endothelial cell contraction at high VEGFA levels” with graphId f1129
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId abf9e
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId a839e
• http://classic.wikipathways.org/instance/WP3888_r126337 “Promotes endothelial- leukocyte interactions” with graphId d738f
• http://classic.wikipathways.org/instance/WP3888_r126337 “G-actin binding and actin polymerization” with graphId a815c
• http://classic.wikipathways.org/instance/WP3888_r126337 “Angiogenesis” with graphId bee90
• http://classic.wikipathways.org/instance/WP3888_r126337 “Epoxyeicosatrienoic acid regioisomers “ with graphId d8501
• http://classic.wikipathways.org/instance/WP3888_r126337 “F-actin reorganization” with graphId a4248
• http://classic.wikipathways.org/instance/WP3888_r126337 “RNA elongation by RNA Pol II” with graphId f0672
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId de1d7
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId baec3
• http://classic.wikipathways.org/instance/WP3888_r126337 “EN” with graphId c65c6
• http://classic.wikipathways.org/instance/WP3888_r126337 “PM” with graphId f641e
• http://classic.wikipathways.org/instance/WP3888_r126337 “EC Migration” with graphId f63d8
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId c6578
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId c6479
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId bb79b
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId cea56
• http://classic.wikipathways.org/instance/WP3888_r126337 “Stress fibre formation” with graphId ae7f2
• http://classic.wikipathways.org/instance/WP3888_r126337 “Adherens junction disassembly” with graphId d2494
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId aeb88
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId bd836
• http://classic.wikipathways.org/instance/WP3888_r126337 “Regulation of chromatin remodelling” with graphId a62eb
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId d69c5
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId a3403
• http://classic.wikipathways.org/instance/WP3888_r126337 “Endothelial cell survival” with graphId db202
• http://classic.wikipathways.org/instance/WP3888_r126337 “NU” with graphId eefb6
• http://classic.wikipathways.org/instance/WP3888_r126337 “CY” with graphId e3e39
• http://classic.wikipathways.org/instance/WP3888_r126337 “Promotes endothelial- leukocyte interactions” with graphId c46de
• http://classic.wikipathways.org/instance/WP3888_r126337 “EC proliferation, migration, tube formation and angiogenesis” with graphId ca246
• http://classic.wikipathways.org/instance/WP3888_r126337 “EN” with graphId d8129
• http://classic.wikipathways.org/instance/WP3888_r126337 “Occludin internalization and proteosomal degradation” with graphId ccf1e
• http://classic.wikipathways.org/instance/WP3888_r126337 “Cell motility and tube formation” with graphId e0c23
• http://classic.wikipathways.org/instance/WP3888_r126337 “Gene expression” with graphId b0393
• http://classic.wikipathways.org/instance/WP3888_r126337 “Directed Cell migration” with graphId d14c1

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels