wikipathways-collection

WikiPathways WP3860

• WikiPathways: WP3860 (classic)
• Species: Arabidopsis thaliana

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 13
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/DataNode/e6633 (GBF-bZIP)
• http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/DataNode/a92c6 (HUP1)
• http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/DataNode/b7d01 (HUP2)
• http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/DataNode/a68a6 (TF)
• http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/DataNode/a8fcb (TF)
• http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/DataNode/e4274 (TF)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP3860_r117237 "Energy Deprivation " with graphId f5f95
http://classic.wikipathways.org/instance/WP3860_r117237 "Starch" with graphId a8e31

Possible MIM translocation

Interactions between identical nodes: 13

http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/idfb6b2864 "Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/idfb6b2864 "Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
D-Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/idfb6b2864 "D-Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/idfb6b2864 "D-Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
D-Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id86d36ffc "Sucrose" (https://identifiers.org/hmdb/HMDB0000258) and 
Sucrose" (https://identifiers.org/hmdb/HMDB0000258)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id8d616302 "Sucrose" (https://identifiers.org/hmdb/HMDB0000258) and 
Sucrose" (https://identifiers.org/hmdb/HMDB0000258)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/idf9233417 "Maltose" (https://identifiers.org/hmdb/HMDB0000163) and 
Maltose" (https://identifiers.org/hmdb/HMDB0000163)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id43b39fca "Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id43b39fca "Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
D-Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id43b39fca "D-Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id43b39fca "D-Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
D-Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id104f6e9a "Triosephosphate" (https://identifiers.org/pubchem.compound/729) and 
Triosephosphate" (https://identifiers.org/pubchem.compound/729)
http://classic.wikipathways.org/instance/WP3860_r117237 http://rdf.wikipathways.org/Pathway/WP3860_r117237/WP/Interaction/id1077ba31 "UDP-Glucose" (https://identifiers.org/pubchem.compound/8629) and 
UDP-Glucose" (https://identifiers.org/pubchem.compound/8629)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations