wikipathways-collection

WikiPathways WP3856

• WikiPathways: WP3856 (classic)
• Species: Anopheles gambiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 18
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 18

• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/df20a (Bendless)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/fd402 (CLIPC8)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/d4fa5 (Caspar)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/ebcc3 (Dredd)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/a9ce5 (Effete)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/d67ba (IKK2)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/c20bb (JAK)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/ffbab (JAK)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/b6d91 (JNK)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/d9f46 (Myd88)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/a5f82 (PIAS)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/ff231 (Pellino)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/a184c (Socs)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/aad67 (Tab2)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/eb26c (Tak1)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/e4016 (Toll)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/d07ad (UPD)
• http://classic.wikipathways.org/instance/WP3856_r117226 http://rdf.wikipathways.org/Pathway/WP3856_r117226/DataNode/b0695 (Uev1a)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP3856_r117226 Relish with datasource NCBI Protein

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 5

• http://classic.wikipathways.org/instance/WP3856_r117226 “Upregulation of Immune Genes” with graphId f275b
• http://classic.wikipathways.org/instance/WP3856_r117226 “P. falciparum” with graphId bd13e
• http://classic.wikipathways.org/instance/WP3856_r117226 “P. berghei” with graphId b7674
• http://classic.wikipathways.org/instance/WP3856_r117226 “Effector Genes” with graphId d5838
• http://classic.wikipathways.org/instance/WP3856_r117226 “P.vivax” with graphId d5587

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels