wikipathways-collection

WikiPathways WP3851

• WikiPathways: WP3851 (classic)
• Species: Homo sapiens
• Scholia: WP3851

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 13
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 13

http://classic.wikipathways.org/instance/WP3851_r137281 TNF with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 RIP1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 MAL with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 TRIF with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 IkBa with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 NAP1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 IKBKE with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 IRAK3 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 SHIP1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 NEMO with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 CHUK with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 TAK1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP3851_r137281 IKBKB with datasource UniProtKB

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 1

• http://classic.wikipathways.org/instance/WP3851_r137281 “MAP kinases” with graphId f1d3f

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels