wikipathways-collection

WikiPathways WP3668

• WikiPathways: WP3668 (classic)
• Species: Homo sapiens
• Scholia: WP3668

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 11
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 3

• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/c0eeb (Calcium calneurin pathway)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/dd571 (Development and maintenance of cardiovascular structure and function)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/e159b (ECM remodeling)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 11

• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/a4415 (Aortic aneurysm)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/bafd8 (Atherosclerosis)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/e388d (Cardiomyopathy)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/cf2ee (Cell differentiation)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/dd571 (Development and maintenance of cardiovascular structure and function)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/e159b (ECM remodeling)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/efaff (Endocardial and epicardial EMT)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/b0123 (Heart valve disease)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/fde54 (Hypertension)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/c5c4d (Kawasaki disease)
• http://classic.wikipathways.org/instance/WP3668_r128974 http://rdf.wikipathways.org/Pathway/WP3668_r128974/DataNode/b0487 (Neural crest migration)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP3668_r128974 "TGFB ligands, 
Receptors, 
Activators, 
Effectors" with graphId c9d97