wikipathways-collection

WikiPathways WP3529

• WikiPathways: WP3529 (classic)
• Species: Homo sapiens
• Scholia: WP3529

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 19
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 3

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP3529_r134312 MT1L with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 2

• http://classic.wikipathways.org/instance/WP3529_r134312 “MTs” with graphId dda1a
• http://classic.wikipathways.org/instance/WP3529_r134312 “MREs” with graphId ed754

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 19

• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/fc590 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/id6b4a7265 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/b6aac “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/ade59 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/cd037 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/b6e2b “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/idc429b1b “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/c15f4 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/id703d3427 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/e1379 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/e5ff2 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/fe371 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/f171d “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/a8def “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/bcead “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/fe5a1 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/c575c “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/idc81b3b40 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)
• http://classic.wikipathways.org/instance/WP3529_r134312 http://rdf.wikipathways.org/Pathway/WP3529_r134312/WP/Interaction/f96c5 “Zn2+” (https://identifiers.org/chebi/CHEBI:29105) and Zn2+” (https://identifiers.org/chebi/CHEBI:29105)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations