wikipathways-collection

WikiPathways WP3287

• WikiPathways: WP3287 (classic)
• Species: Homo sapiens
• Scholia: WP3287

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 7
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3

http://classic.wikipathways.org/instance/WP3287_r121705 Metallothionein with datasource Pfam
http://classic.wikipathways.org/instance/WP3287_r121705 ferritin with datasource Pfam
http://classic.wikipathways.org/instance/WP3287_r121705 Actin with datasource Pfam

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 7

• http://classic.wikipathways.org/instance/WP3287_r121705 “Cell death” with graphId db45e
• http://classic.wikipathways.org/instance/WP3287_r121705 “DNA damage” with graphId bd07f
• http://classic.wikipathways.org/instance/WP3287_r121705 “Coronary heart disease, plaques, DIC” with graphId fc53e
• http://classic.wikipathways.org/instance/WP3287_r121705 “Acute lung effects: hypercoagulation, hypofibrinolysis, etc.” with graphId c1303
• http://classic.wikipathways.org/instance/WP3287_r121705 “Endocytosis Exocytosis Phagocytosis” with graphId bb7a9
• http://classic.wikipathways.org/instance/WP3287_r121705 “Mitochondrial potential” with graphId d2d94
• http://classic.wikipathways.org/instance/WP3287_r121705 “Genotoxicity / Cancer” with graphId a88d7

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels