wikipathways-collection

WikiPathways WP3226

• WikiPathways: WP3226 (classic)
• Species: Bos taurus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 17
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 17

• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/b102a ()
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/c3719 (Angiogenesis)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/c47aa (Calcium Channel)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/a4114 (Cell Survival)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/c5a48 (Cell Survival )
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/ba575 (Cell cycle inhibition)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/b328d (DRE region)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/e435b (Detoxification of Xenobiotics and metabolism of xenobiotics )
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/e1169 (EBNA-3)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/e867d (EGFR Pathway)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/fed0f (Estrogen Metabolism and modulation of Estrogen receptor signalling)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/f34fd (FAS/ FAS-L (Apoptosis))
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/cc14a (KRAS)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/c854d (Oxidative Stress )
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/c3d69 (TATA)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/b3edf (XRE)
• http://classic.wikipathways.org/instance/WP3226_r117477 http://rdf.wikipathways.org/Pathway/WP3226_r117477/DataNode/de1a6 (proliferation and tumorigenesis )

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP3226_r117477 NFE2L2 with datasource Ensembl

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping