wikipathways-collection

WikiPathways WP3142

• WikiPathways: WP3142 (classic)
• Species: Bos taurus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 9
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • achiralAminoAcids: .x we found 1 problem(s):
    • Metabolites with ChEBI identifiers of achiral amino acids: 1
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • metaboliteAlsoOtherType: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 9

• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/c1617 (Bile Salts)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/e4528 (Creatine)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/fadfc (Glutathione)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/c7951 (Glycine Oxidase)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/d5114 (Glycine Transaminase)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/f4b93 (Glyoxalate)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/ebdd1 (Heme)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/fa412 (Oxalate)
• http://classic.wikipathways.org/instance/WP3142_r117523 http://rdf.wikipathways.org/Pathway/WP3142_r117523/DataNode/f416f (a-Iminoacetate)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Identifier used of a amino acid with undefined stereochemistry

Metabolites with ChEBI identifiers of achiral amino acids: 1

http://classic.wikipathways.org/instance/WP3142_r117523 Serine CHEBI:17822

More details at https://www.wikipathways.org/WikiPathwaysCurator/MetabolitesTests/achiralAminoAcids