wikipathways-collection

WikiPathways WP314

• WikiPathways: WP314 (classic)
• Species: Homo sapiens
• Scholia: WP314

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 42
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 42

http://classic.wikipathways.org/instance/WP314_r137424 ARHGDIB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 MAPKAPK3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 LMNB1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 ACTB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 SPTAN1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 MAPK8 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 FADD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CASP9 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 DFFB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CYCS with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CASP10 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CASP7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 LMNB2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 PARP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 ACTG1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CASP6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 RIPK2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 PAK2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 HSPB1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 MAP3K1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 PAK1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 DAXX with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 MAP3K7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 MAPKAPK2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 FAF1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 IL1A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CASP8 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 FASLG with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 LMNA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 JUN with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 ACTA1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 TNF with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CASP3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 BCL2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 RB1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 FAP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 CFLAR with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 DFFA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 PRKDC with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 APAF1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 MAP2K4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP314_r137424 FAS with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping