wikipathways-collection

WikiPathways WP3114

• WikiPathways: WP3114 (classic)
• Species: Bos taurus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 38
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • achiralAminoAcids: .x we found 1 problem(s):
    • Metabolites with ChEBI identifiers of achiral amino acids: 1
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • metaboliteAlsoOtherType: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 119
• Number of assertions: 239
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 38

• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/a3230 (1, 3 Bisphosphate Glycerate)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/ce77a (2 Phosphoglycerate)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/b7dfa (3 Phosphoglycerate)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/a3057 (6P Gluconate)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/faf26 (6P Gluconic Acid Lactone)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/df068 (ADP)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/e63d3 (ADP)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/fc248 (ALDOA)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/da53c (ATP)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/dc5ca (ATP)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/c9023 (DHAP)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/d221f (Enolase)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/fd93c (Epimerase)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/c90c7 (Erythrose)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/b84f5 (Fructose 6P)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/f6a51 (Fructose 6P)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/e580d (G3P)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/f29bf (G3P)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/b7454 (G6P)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/d829a (G6P)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/f31a7 (Gluconeogenesis)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/c6585 (Gluconolactonase)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/ea499 (Glycogen )
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/b6c39 (Glycogenesis)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/fa452 (Glycogenesis)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/b4e67 (Glycogenolysis)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/e5e93 (Glycogenolysis)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/d403b (Glycolosis)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/f107c (Insulin)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/af51d (Isomerase)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/e1fcb (PGAM1)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/ce9df (PGK2)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/f1a9d (Phosphoenol Pyruvate)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/edd8a (Pyruvate)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/bf5ee (Pyruvate Kinase)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/bbbc5 (Rubulose)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/a91d5 (Transketolase)
• http://classic.wikipathways.org/instance/WP3114_r123384 http://rdf.wikipathways.org/Pathway/WP3114_r123384/DataNode/d02bf (Transketolase)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

MetabolitesTests.achiralAminoAcids

Metabolites with ChEBI identifiers of achiral amino acids: 1

http://classic.wikipathways.org/instance/WP3114_r123384 Alanine CHEBI:16449