wikipathways-collection

WikiPathways WP310

• WikiPathways: WP310 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 99
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 99

http://classic.wikipathways.org/instance/WP310_r122791 D5Ertd700e with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 U2af1-rs1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI642080 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI256354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 2810411C16Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 6720478K01Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 D15Ertd119e with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI467299 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 C85084 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI194270 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 1700095D18Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Rnu11 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 1700047G05Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI447568 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 G430095G15Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 C79783 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 D830027H13Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 1810036E18Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AW107884 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI503051 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Tiaf1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 2410013L13Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 3110061K15Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Nsap1l-pending with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 4930422M05Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI255750 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 5031411E02Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI043106 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI255847 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Rnu108 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI844780 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 4930534J06Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 3830425H19Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2600016C11Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI843301 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 1500012C14Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2410112D09Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AW553050 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 1600023H17Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 D9Mgi24 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 5730557H03Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 1700003D06Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2010319N22Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 1110033J19Rik with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 4932422M17Rik with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI462171 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AW049977 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 D12Mgi40 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AA589495 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2600016F06Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI314192 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 4632417O19Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2010300K22Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI256346 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI255207 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 Matr3-ps1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 2610015J01Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 9430070C08Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI255215 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 C330027G06Rik with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 C80672 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AA522010 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AL022933 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Dkc1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AU045931 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AU023006 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI255212 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 2610209F03Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Ncbp1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 G3bp2-pending with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 4930506D01Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI255230 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 9130414A06Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2810055E05Rik with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 2610023M21Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 5330419I02Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 A130095G20Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 D1Pas1-rs1 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 D12Mgi43 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 Rnu1a2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 4930554P13Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2310046H11Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Hdp with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI255840 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2610102M01Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AW260507 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2810036M01Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2700077B20Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 C230097K14Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AA407033 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 2700028P07Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 Matr3-ps2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 1810036A22Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI504630 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 0610009J05Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 8030431D03Rik with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 AI255183 with datasource MGI
http://classic.wikipathways.org/instance/WP310_r122791 BB131279 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP310_r122791 AI255219 with datasource MGI

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP310_r122791 ‘mRNA processing’ in Mus musculus has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference