wikipathways-collection

WikiPathways WP2902

• WikiPathways: WP2902 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 41
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 41

http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-21-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-758-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-297a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-21a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-340-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-17-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-223-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-30e-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-195a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-122-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-449a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-486-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-181a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-301b-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-291a-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-149-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-425-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-18a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-294-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-let-7b-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-181b-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-503-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-29b-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-302d-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-19b-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-216a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-145a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-291b-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-103a-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-124-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-34b-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-16-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-362-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-295-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-15a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-24-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-7b-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-20a-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-9-5p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-1a-3p with datasource miRBase mature sequence
http://classic.wikipathways.org/instance/WP2902_r88290 mmu-miR-217-5p with datasource miRBase mature sequence

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 11

• http://classic.wikipathways.org/instance/WP2902_r88290 “Cell cycle arrest” with graphId c4f7d
• http://classic.wikipathways.org/instance/WP2902_r88290 “G2 arrest (sustained)” with graphId c8cc4
• http://classic.wikipathways.org/instance/WP2902_r88290 “Inhibition of IGF-1/mTOR pathway” with graphId da086
• http://classic.wikipathways.org/instance/WP2902_r88290 “DNA repair and damage prevention” with graphId c11e5
• http://classic.wikipathways.org/instance/WP2902_r88290 “Apoptosis” with graphId dfcdd
• http://classic.wikipathways.org/instance/WP2902_r88290 “G1 arrest (sustained)” with graphId f0130
• http://classic.wikipathways.org/instance/WP2902_r88290 “DNA damage” with graphId ae661
• http://classic.wikipathways.org/instance/WP2902_r88290 “Genotoxic stress” with graphId d7616
• http://classic.wikipathways.org/instance/WP2902_r88290 “p53 negative feedback” with graphId b8514
• http://classic.wikipathways.org/instance/WP2902_r88290 “Exosome mediated secretion” with graphId ea0a5
• http://classic.wikipathways.org/instance/WP2902_r88290 “Inhibition of angiogenesis and metastasis” with graphId b5d6d

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels