wikipathways-collection

WikiPathways WP2854

• WikiPathways: WP2854 (classic)
• Species: Homo sapiens
• Scholia: WP2854

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 7
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 1

Fails

Possible MIM translocation

Interactions between identical nodes: 7

• http://classic.wikipathways.org/instance/WP2854_r128433 http://rdf.wikipathways.org/Pathway/WP2854_r128433/WP/Interaction/idc151bef8 “FGF8” (https://identifiers.org/ensembl/ENSG00000107831) and FGF8” (https://identifiers.org/ensembl/ENSG00000107831)
• http://classic.wikipathways.org/instance/WP2854_r128433 http://rdf.wikipathways.org/Pathway/WP2854_r128433/WP/Interaction/id96bcac66 “HES1” (https://identifiers.org/ensembl/ENSG00000114315) and HES1” (https://identifiers.org/ensembl/ENSG00000114315)
• http://classic.wikipathways.org/instance/WP2854_r128433 http://rdf.wikipathways.org/Pathway/WP2854_r128433/WP/Interaction/id9b749d6d “WNT3A” (https://identifiers.org/ensembl/ENSG00000154342) and WNT3A” (https://identifiers.org/ensembl/ENSG00000154342)
• http://classic.wikipathways.org/instance/WP2854_r128433 http://rdf.wikipathways.org/Pathway/WP2854_r128433/WP/Interaction/id20315a91 “FGF8” (https://identifiers.org/ensembl/ENSG00000107831) and FGF8” (https://identifiers.org/ensembl/ENSG00000107831)
• http://classic.wikipathways.org/instance/WP2854_r128433 http://rdf.wikipathways.org/Pathway/WP2854_r128433/WP/Interaction/id63e5ba7d “HES7” (https://identifiers.org/ensembl/ENSG00000179111) and HES7” (https://identifiers.org/ensembl/ENSG00000179111)
• http://classic.wikipathways.org/instance/WP2854_r128433 http://rdf.wikipathways.org/Pathway/WP2854_r128433/WP/Interaction/idc4fa6cb7 “WNT3A” (https://identifiers.org/ensembl/ENSG00000154342) and WNT3A” (https://identifiers.org/ensembl/ENSG00000154342)
• http://classic.wikipathways.org/instance/WP2854_r128433 http://rdf.wikipathways.org/Pathway/WP2854_r128433/WP/Interaction/id139ec6a6 “FGF8” (https://identifiers.org/ensembl/ENSG00000107831) and FGF8” (https://identifiers.org/ensembl/ENSG00000107831)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations