wikipathways-collection

WikiPathways WP2849

• WikiPathways: WP2849 (classic)
• Species: Homo sapiens
• Scholia: WP2849

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 29
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP2849_r129244 http://rdf.wikipathways.org/Pathway/WP2849_r129244/DataNode/ccad3 (CD34)
• http://classic.wikipathways.org/instance/WP2849_r129244 http://rdf.wikipathways.org/Pathway/WP2849_r129244/DataNode/ed15e (UM279)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 29

http://classic.wikipathways.org/instance/WP2849_r129244 PADI4 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 ZGLP1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 TGFB1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 PRDM5 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 EGF with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 F2R with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 HEXIM1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 PIM2 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 HLF with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 LBX2 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 GATA5 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 RUN1T1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 LOXL3 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 HEXIM2 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 FLI1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 MEF2C with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 LMO2 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 CRLF3 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 CDH1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 ZFP37 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 TXK with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 NLK with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 ZNF792 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 ELF1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 MED12L with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 WNT11 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 PBX1 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 ZNF789 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2849_r129244 RCAN1 with datasource UniProtKB

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping