wikipathways-collection

WikiPathways WP2828

• WikiPathways: WP2828 (classic)
• Species: Homo sapiens
• Scholia: WP2828

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 17
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP2828_r128550 http://rdf.wikipathways.org/Pathway/WP2828_r128550/DataNode/ec254 (Adherens junction )
• http://classic.wikipathways.org/instance/WP2828_r128550 http://rdf.wikipathways.org/Pathway/WP2828_r128550/DataNode/ed0cd (PI3K)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 17

http://classic.wikipathways.org/instance/WP2828_r128550 "Endothelial cell migration" with graphId afc8c
http://classic.wikipathways.org/instance/WP2828_r128550 "Hyperplasia" with graphId cd447
http://classic.wikipathways.org/instance/WP2828_r128550 "Normal urothelium" with graphId f3052
http://classic.wikipathways.org/instance/WP2828_r128550 "Promoter methylation" with graphId fb07d
http://classic.wikipathways.org/instance/WP2828_r128550 "CIS / dysplasia" with graphId dbc9f
http://classic.wikipathways.org/instance/WP2828_r128550 "Invasive tumor
(High-grade)" with graphId fdea3
http://classic.wikipathways.org/instance/WP2828_r128550 "Degradation of extracellular matrix" with graphId a43fb
http://classic.wikipathways.org/instance/WP2828_r128550 "Normal
urothelium" with graphId ea339
http://classic.wikipathways.org/instance/WP2828_r128550 "Chemoattraction of endothelial cells" with graphId ef913
http://classic.wikipathways.org/instance/WP2828_r128550 "Oxidative stress" with graphId de05b
http://classic.wikipathways.org/instance/WP2828_r128550 "Metastasis" with graphId d98be
http://classic.wikipathways.org/instance/WP2828_r128550 "Low-grade
non-invasive
papillary tumor" with graphId a0015
http://classic.wikipathways.org/instance/WP2828_r128550 "G1/S progression" with graphId a1ea5
http://classic.wikipathways.org/instance/WP2828_r128550 "Recurrence" with graphId e2c64
http://classic.wikipathways.org/instance/WP2828_r128550 "Endothelial cell proliferation" with graphId cd97c
http://classic.wikipathways.org/instance/WP2828_r128550 "Defect in cell-cell adhesion" with graphId f6149
http://classic.wikipathways.org/instance/WP2828_r128550 "Reduced expression" with graphId f36f3