wikipathways-collection

WikiPathways WP2806

• WikiPathways: WP2806 (classic)
• Species: Homo sapiens
• Scholia: WP2806

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 18
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 33
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 34
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 18

• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/cd502 ( Leishmanial protein kinase-1)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/f5fcc ( Leishmanial protein kinase-1)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/e4901 (C3bB3b)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/b45a6 (C3bB3bP)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/fd0cb (C3bBb)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/f7d7c (C3bBbP)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/f51e9 (C4b2b)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/fd947 (C4b2b3b)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/abf72 (Gpm1p)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/fb8cf (Gpm1p)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/d6249 (Leishmanial protein kinase-1)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/ce903 (NS1)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/c70d2 (Por1A)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/ce842 (Por1B)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/a68bc (SPICE)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/a9235 (SPICE)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/bbbf9 (SPICE)
• http://classic.wikipathways.org/instance/WP2806_r138047 http://rdf.wikipathways.org/Pathway/WP2806_r138047/DataNode/ee071 (TFECP )

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 33

http://classic.wikipathways.org/instance/WP2806_r138047 Protein M with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP2806_r138047 VCP with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 SSL5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 CFB with datasource HGNC Accession number
http://classic.wikipathways.org/instance/WP2806_r138047 SSL7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 ClfA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 OMCI with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 LfhA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 FnBPB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 Skp with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 CHIPS with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 Efb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 LfhA with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 FnBPA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 HSV-gC with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 StcE with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 SCP with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP2806_r138047 GNA1870 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 HIV-gp41 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 CbpA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 Protein-A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 Sfb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 OmpK36 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 Ehp with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 SSL11 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 SIC with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 SSL10 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 Sbi with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 RgpA with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP2806_r138047 C1r with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 gp350 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP2806_r138047 Ehp with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP2806_r138047 ClfB with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 34

• http://classic.wikipathways.org/instance/WP2806_r138047 “C3(H2O)Bb” with graphId f0d20
• http://classic.wikipathways.org/instance/WP2806_r138047 “IgG” with graphId f3915
• http://classic.wikipathways.org/instance/WP2806_r138047 “Thrombin “ with graphId e3536
• http://classic.wikipathways.org/instance/WP2806_r138047 “Compstatin” with graphId f62a5
• http://classic.wikipathways.org/instance/WP2806_r138047 “C4bC2” with graphId e1c1f
• http://classic.wikipathways.org/instance/WP2806_r138047 “Plasmin” with graphId f26f8
• http://classic.wikipathways.org/instance/WP2806_r138047 “Plasmin” with graphId a33e9
• http://classic.wikipathways.org/instance/WP2806_r138047 “FXa” with graphId eff1e
• http://classic.wikipathways.org/instance/WP2806_r138047 “Plasmin” with graphId a5e2c
• http://classic.wikipathways.org/instance/WP2806_r138047 “C5b67 complex” with graphId fda63
• http://classic.wikipathways.org/instance/WP2806_r138047 “C5b6 complex” with graphId a4af3
• http://classic.wikipathways.org/instance/WP2806_r138047 “C5b6-9 complex” with graphId a5daf
• http://classic.wikipathways.org/instance/WP2806_r138047 “IgM” with graphId fa8e2
• http://classic.wikipathways.org/instance/WP2806_r138047 “Fibrin “ with graphId d054f
• http://classic.wikipathways.org/instance/WP2806_r138047 “Degradation” with graphId a20b6
• http://classic.wikipathways.org/instance/WP2806_r138047 “Clusterin” with graphId de0e2
• http://classic.wikipathways.org/instance/WP2806_r138047 “Plasmin” with graphId b9956
• http://classic.wikipathways.org/instance/WP2806_r138047 “ Neutrophil inhibitory factor (NIF) “ with graphId e8e20
• http://classic.wikipathways.org/instance/WP2806_r138047 “C3(H2O)Bb” with graphId eb0b8
• http://classic.wikipathways.org/instance/WP2806_r138047 “FXIa” with graphId f0807
• http://classic.wikipathways.org/instance/WP2806_r138047 “IgG” with graphId d4f26
• http://classic.wikipathways.org/instance/WP2806_r138047 “IgA” with graphId f8cca
• http://classic.wikipathways.org/instance/WP2806_r138047 “FXIa” with graphId a38fb
• http://classic.wikipathways.org/instance/WP2806_r138047 “Degradation” with graphId fe21d
• http://classic.wikipathways.org/instance/WP2806_r138047 “C5b678 complex” with graphId c84ec
• http://classic.wikipathways.org/instance/WP2806_r138047 “Degradation” with graphId b4857
• http://classic.wikipathways.org/instance/WP2806_r138047 “FIXa “ with graphId a7878
• http://classic.wikipathways.org/instance/WP2806_r138047 “FXa” with graphId c9fe1
• http://classic.wikipathways.org/instance/WP2806_r138047 “Fibrin “ with graphId a6dd9
• http://classic.wikipathways.org/instance/WP2806_r138047 “Degradation” with graphId c7692
• http://classic.wikipathways.org/instance/WP2806_r138047 “IgG” with graphId a7f9a
• http://classic.wikipathways.org/instance/WP2806_r138047 “IgM” with graphId f1b20
• http://classic.wikipathways.org/instance/WP2806_r138047 “Thrombin “ with graphId f8344
• http://classic.wikipathways.org/instance/WP2806_r138047 “FIXa “ with graphId ca67f

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels