wikipathways-collection

WikiPathways WP2805

• WikiPathways: WP2805 (classic)
• Species: Homo sapiens
• Scholia: WP2805

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 13
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 13

• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/c2133 (dsRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/b3c7f (exo-siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/ecb79 (exo-siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/e08b1 (miRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/b3ce0 (pre-miRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/ac2cf (pri-miRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/b285c (siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/ba906 (siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/c4cf4 (siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/df39a (siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/e8da4 (siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/ef25e (siRNA)
• http://classic.wikipathways.org/instance/WP2805_r106523 http://rdf.wikipathways.org/Pathway/WP2805_r106523/DataNode/fea8b (siRNA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 3

http://classic.wikipathways.org/instance/WP2805_r106523 "mRNA cleavage
and degradation" with graphId f4a98
http://classic.wikipathways.org/instance/WP2805_r106523 "Viral miRNA" with graphId cd139
http://classic.wikipathways.org/instance/WP2805_r106523 "Translational repression
or mRNA degradation" with graphId bdc2f