wikipathways-collection

WikiPathways WP278

• WikiPathways: WP278 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 13
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 13

http://classic.wikipathways.org/instance/WP278_r137001 Timp1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp8 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp1a with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Tcf20 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp12 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp10 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp13 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp20 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp27 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp19 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Timp3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP278_r137001 Mmp3 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping