wikipathways-collection

WikiPathways WP2637

• WikiPathways: WP2637 (classic)
• Species: Homo sapiens
• Scholia: WP2637

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 9
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 9

• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/b9963 (B-defensin2 etc )
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/dc3ac (CREB341)
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/f41db (Cell Cycle)
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/d5151 (IFNalpha/beta)
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/b8118 (IL1,8,6, TNFa, IFNg, COX2, iNOS)
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/a910f (Modification)
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/a98ff (NF-kappaB p50)
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/a8032 (Translation)
• http://classic.wikipathways.org/instance/WP2637_r127757 http://rdf.wikipathways.org/Pathway/WP2637_r127757/DataNode/ab597 (cyclinD1 etc.)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP2637_r127757 Histone H3 with datasource UniProtKB

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping