wikipathways-collection

WikiPathways WP2633

• WikiPathways: WP2633 (classic)
• Species: Solanum lycopersicum

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP2633_r87617 http://rdf.wikipathways.org/Pathway/WP2633_r87617/DataNode/a47a4 (G Protein)
• http://classic.wikipathways.org/instance/WP2633_r87617 http://rdf.wikipathways.org/Pathway/WP2633_r87617/DataNode/addbe (Mechanosensor)
• http://classic.wikipathways.org/instance/WP2633_r87617 http://rdf.wikipathways.org/Pathway/WP2633_r87617/DataNode/d2bc4 (P67)
• http://classic.wikipathways.org/instance/WP2633_r87617 http://rdf.wikipathways.org/Pathway/WP2633_r87617/DataNode/f4818 (Receptor)
• http://classic.wikipathways.org/instance/WP2633_r87617 http://rdf.wikipathways.org/Pathway/WP2633_r87617/DataNode/a9793 (p22(phox))
• http://classic.wikipathways.org/instance/WP2633_r87617 http://rdf.wikipathways.org/Pathway/WP2633_r87617/DataNode/b4c5d (p47)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 5

http://classic.wikipathways.org/instance/WP2633_r87617 "phospholipase C" with graphId d2a05
http://classic.wikipathways.org/instance/WP2633_r87617 "Physical pressure or 
Osmotic Stress" with graphId ec9b7
http://classic.wikipathways.org/instance/WP2633_r87617 "phospholipase A" with graphId c6417
http://classic.wikipathways.org/instance/WP2633_r87617 "Oligogalacturonic Acids" with graphId f6fbf
http://classic.wikipathways.org/instance/WP2633_r87617 "V. dahliae" with graphId f7331