wikipathways-collection

WikiPathways WP2573

• WikiPathways: WP2573 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 14
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP2573_r125285 MT-TL1 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 14

• http://classic.wikipathways.org/instance/WP2573_r125285 “Syndromic” with graphId b5cf0
• http://classic.wikipathways.org/instance/WP2573_r125285 “ANTICLA4” with graphId e26fd
• http://classic.wikipathways.org/instance/WP2573_r125285 “PRIMARY FSGS” with graphId d2a6c
• http://classic.wikipathways.org/instance/WP2573_r125285 “PODOCYTOPENIA” with graphId d1789
• http://classic.wikipathways.org/instance/WP2573_r125285 “P13K” with graphId ac049
• http://classic.wikipathways.org/instance/WP2573_r125285 “CALCIUM” with graphId a1b1e
• http://classic.wikipathways.org/instance/WP2573_r125285 “CALCINEURIN” with graphId cc39b
• http://classic.wikipathways.org/instance/WP2573_r125285 “ACTIN” with graphId cc73b
• http://classic.wikipathways.org/instance/WP2573_r125285 “APOPTOSIS” with graphId c6ff3
• http://classic.wikipathways.org/instance/WP2573_r125285 “PRIMARY INJURY” with graphId c6a5c
• http://classic.wikipathways.org/instance/WP2573_r125285 “STABILIZES PODOCYTE CYTOSKELETON” with graphId fc4b9
• http://classic.wikipathways.org/instance/WP2573_r125285 “DESTRUCTION OF PODOCYTE ARCHITECTURE” with graphId d5200
• http://classic.wikipathways.org/instance/WP2573_r125285 “ESRD” with graphId f2d34
• http://classic.wikipathways.org/instance/WP2573_r125285 “Nonsyndromic” with graphId c59e7

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels