wikipathways-collection

WikiPathways WP2516

• WikiPathways: WP2516 (classic)
• Species: Homo sapiens
• Scholia: WP2516

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 6

http://classic.wikipathways.org/instance/WP2516_r129687 "MDMX ubiquitination & degradation" with graphId cc9e9
http://classic.wikipathways.org/instance/WP2516_r129687 "Synaptic vesicle transport" with graphId dc7c0
http://classic.wikipathways.org/instance/WP2516_r129687 "Cell survival" with graphId c7b53
http://classic.wikipathways.org/instance/WP2516_r129687 "Cell survival" with graphId dca06
http://classic.wikipathways.org/instance/WP2516_r129687 "Cell survival" with graphId c5d19
http://classic.wikipathways.org/instance/WP2516_r129687 "STRUCTURAL CHANGE OF CHROMATIN" with graphId c4461

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP2516_r129687 http://rdf.wikipathways.org/Pathway/WP2516_r129687/WP/Interaction/ida37f0fc3 "ATM" (https://identifiers.org/ensembl/ENSG00000149311) and 
ATM" (https://identifiers.org/ensembl/ENSG00000149311)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations