wikipathways-collection

WikiPathways WP2447

• WikiPathways: WP2447 (classic)
• Species: Homo sapiens
• Scholia: WP2447

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 16
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 16

http://classic.wikipathways.org/instance/WP2447_r128125 "Neuron death" with graphId f875f
http://classic.wikipathways.org/instance/WP2447_r128125 "Ubiquitin proteosome
dysfunction" with graphId af14a
http://classic.wikipathways.org/instance/WP2447_r128125 "Increased ROS" with graphId e33d8
http://classic.wikipathways.org/instance/WP2447_r128125 "Aggregates" with graphId d10b5
http://classic.wikipathways.org/instance/WP2447_r128125 "Mitochondria" with graphId b1e57
http://classic.wikipathways.org/instance/WP2447_r128125 "Aggregates" with graphId e7ea6
http://classic.wikipathways.org/instance/WP2447_r128125 "Accumulation of
misfolded proteins" with graphId bedbf
http://classic.wikipathways.org/instance/WP2447_r128125 "Impairment of
axonal transport" with graphId e38ad
http://classic.wikipathways.org/instance/WP2447_r128125 "tBid " with graphId f559c
http://classic.wikipathways.org/instance/WP2447_r128125 "ER stress" with graphId fc1ca
http://classic.wikipathways.org/instance/WP2447_r128125 "Low Ca2+ buffering capacity" with graphId a6f86
http://classic.wikipathways.org/instance/WP2447_r128125 "ATP depletion Fall in
mitochondrial
membrane potential" with graphId f7b4d
http://classic.wikipathways.org/instance/WP2447_r128125 "DNA damage" with graphId accaa
http://classic.wikipathways.org/instance/WP2447_r128125 "Disturbance of
mitochondrial respiration" with graphId c9a4d
http://classic.wikipathways.org/instance/WP2447_r128125 "DNA" with graphId dfe3d
http://classic.wikipathways.org/instance/WP2447_r128125 "Abnormal Rab5
dependent endycytosis?" with graphId db1b0

Possible MIM translocation

Interactions between identical nodes: 6

http://classic.wikipathways.org/instance/WP2447_r128125 http://rdf.wikipathways.org/Pathway/WP2447_r128125/WP/Interaction/id85aed399 "NO" (https://identifiers.org/hmdb/HMDB0003378) and 
NO" (https://identifiers.org/hmdb/HMDB0003378)
http://classic.wikipathways.org/instance/WP2447_r128125 http://rdf.wikipathways.org/Pathway/WP2447_r128125/WP/Interaction/id6fcdb47 "NO" (https://identifiers.org/hmdb/HMDB0003378) and 
NO" (https://identifiers.org/hmdb/HMDB0003378)
http://classic.wikipathways.org/instance/WP2447_r128125 http://rdf.wikipathways.org/Pathway/WP2447_r128125/WP/Interaction/id8c85cf83 "NO" (https://identifiers.org/hmdb/HMDB0003378) and 
NO" (https://identifiers.org/hmdb/HMDB0003378)
http://classic.wikipathways.org/instance/WP2447_r128125 http://rdf.wikipathways.org/Pathway/WP2447_r128125/WP/Interaction/id3cd23c9 "L-Glutamic acid" (https://identifiers.org/hmdb/HMDB0000148) and 
L-Glutamic acid" (https://identifiers.org/hmdb/HMDB0000148)
http://classic.wikipathways.org/instance/WP2447_r128125 http://rdf.wikipathways.org/Pathway/WP2447_r128125/WP/Interaction/idde65c6be "L-Glutamic acid" (https://identifiers.org/hmdb/HMDB0000148) and 
L-Glutamic acid" (https://identifiers.org/hmdb/HMDB0000148)
http://classic.wikipathways.org/instance/WP2447_r128125 http://rdf.wikipathways.org/Pathway/WP2447_r128125/WP/Interaction/idb3584e45 "NO" (https://identifiers.org/hmdb/HMDB0003378) and 
NO" (https://identifiers.org/hmdb/HMDB0003378)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations