wikipathways-collection

WikiPathways WP2380

• WikiPathways: WP2380 (classic)
• Species: Homo sapiens
• Scholia: WP2380

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 46
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 46

http://classic.wikipathways.org/instance/WP2380_r129694 "Ligand" with graphId bdee8
http://classic.wikipathways.org/instance/WP2380_r129694 "Dendritic 
development" with graphId d4737
http://classic.wikipathways.org/instance/WP2380_r129694 "CDK5
dependent
regulation 
of CDC42
activity" with graphId e1506
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId b7460
http://classic.wikipathways.org/instance/WP2380_r129694 "NU" with graphId ba817
http://classic.wikipathways.org/instance/WP2380_r129694 "Major pelvic
ganglia neurite
outgrowth" with graphId ccb53
http://classic.wikipathways.org/instance/WP2380_r129694 "Neurotransmitter
release" with graphId d4895
http://classic.wikipathways.org/instance/WP2380_r129694 "Neuronal growth,
differentiation,
and protection" with graphId f6ca2
http://classic.wikipathways.org/instance/WP2380_r129694 "Synaptic plasticity" with graphId f8199
http://classic.wikipathways.org/instance/WP2380_r129694 "Nitric oxide
production" with graphId ad8a8
http://classic.wikipathways.org/instance/WP2380_r129694 "Regulation of 
Pre-synaptic
plasticity " with graphId f29e3
http://classic.wikipathways.org/instance/WP2380_r129694 "Lamellipodia formation
and increased
neurite outgrowth" with graphId cc6be
http://classic.wikipathways.org/instance/WP2380_r129694 "Apoptosis" with graphId f6246
http://classic.wikipathways.org/instance/WP2380_r129694 "NU" with graphId d06de
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId d93d4
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId ac8af
http://classic.wikipathways.org/instance/WP2380_r129694 "NU" with graphId f931a
http://classic.wikipathways.org/instance/WP2380_r129694 "Regulation of
synaptic plasticity
" with graphId d2435
http://classic.wikipathways.org/instance/WP2380_r129694 "NU" with graphId a7774
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId f8488
http://classic.wikipathways.org/instance/WP2380_r129694 "Axonal growth
and branching" with graphId db6ec
http://classic.wikipathways.org/instance/WP2380_r129694 "Microtubule
assembly" with graphId d6f80
http://classic.wikipathways.org/instance/WP2380_r129694 "Protein
synthesis" with graphId cd67e
http://classic.wikipathways.org/instance/WP2380_r129694 "Inhibition of
apoptosis" with graphId e9cc8
http://classic.wikipathways.org/instance/WP2380_r129694 "Receptor" with graphId aacf8
http://classic.wikipathways.org/instance/WP2380_r129694 "Release of RNG105
from RNA granules" with graphId af45c
http://classic.wikipathways.org/instance/WP2380_r129694 "Enhanced
fat
oxidation" with graphId f1b50
http://classic.wikipathways.org/instance/WP2380_r129694 "Human airway
smooth muscle cell
proliferation
" with graphId ebb62
http://classic.wikipathways.org/instance/WP2380_r129694 "Endocytosis-
dependent" with graphId f4696
http://classic.wikipathways.org/instance/WP2380_r129694 "Cerebellar
granule
neuronal
survival" with graphId d1507
http://classic.wikipathways.org/instance/WP2380_r129694 "Cortical 
dendrite 
differentiation" with graphId eca75
http://classic.wikipathways.org/instance/WP2380_r129694 "EC" with graphId cc997
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId a8ac7
http://classic.wikipathways.org/instance/WP2380_r129694 "NU" with graphId d8b09
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId d2838
http://classic.wikipathways.org/instance/WP2380_r129694 "Selective
postsynaptic
development
" with graphId c2482
http://classic.wikipathways.org/instance/WP2380_r129694 "Calcification" with graphId a7238
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId d98a4
http://classic.wikipathways.org/instance/WP2380_r129694 "NU" with graphId bdb8a
http://classic.wikipathways.org/instance/WP2380_r129694 "Growth
cone
motility
" with graphId b71c6
http://classic.wikipathways.org/instance/WP2380_r129694 "Radial 
migration
of cortical
neurons
" with graphId a01be
http://classic.wikipathways.org/instance/WP2380_r129694 "Oxidative
neuronal
necrosis" with graphId d7b2f
http://classic.wikipathways.org/instance/WP2380_r129694 "NU" with graphId a11d7
http://classic.wikipathways.org/instance/WP2380_r129694 "CY" with graphId a092e
http://classic.wikipathways.org/instance/WP2380_r129694 "Inhibition of
apoptosis" with graphId ba57c
http://classic.wikipathways.org/instance/WP2380_r129694 "Degradation" with graphId fb800

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP2380_r129694 ‘Brain-derived neurotrophic factor (BDNF) signaling’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference