wikipathways-collection

WikiPathways WP2355

• WikiPathways: WP2355 (classic)
• Species: Homo sapiens
• Scholia: WP2355

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 3
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 39
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/b9584 (ACTH production)
• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/e8668 (G-gamma)
• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/ce675 (PI3K)
• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/ed2d2 (PRKA)
• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/f3353 (PRKA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 3

• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/b9584 (ACTH production)
• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/e8668 (G-gamma)
• http://classic.wikipathways.org/instance/WP2355_r129695 http://rdf.wikipathways.org/Pathway/WP2355_r129695/DataNode/ce675 (PI3K)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

Interactions with Labels

Interactions found that involve Labels: 39

• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId a8a50
• http://classic.wikipathways.org/instance/WP2355_r129695 “NU” with graphId bdd6b
• http://classic.wikipathways.org/instance/WP2355_r129695 “EN” with graphId f6529
• http://classic.wikipathways.org/instance/WP2355_r129695 “PM” with graphId a2ff6
• http://classic.wikipathways.org/instance/WP2355_r129695 “Inhibits cell proliferation” with graphId efd52
• http://classic.wikipathways.org/instance/WP2355_r129695 “VEGF release in mast cells

FASL release in PC12 cells” with graphId cfc5b

• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId be38a
• http://classic.wikipathways.org/instance/WP2355_r129695 “PM” with graphId b7e7b
• http://classic.wikipathways.org/instance/WP2355_r129695 “Placental vessel vasodilation” with graphId d8547
• http://classic.wikipathways.org/instance/WP2355_r129695 “Neuronal survival” with graphId a3d7c
• http://classic.wikipathways.org/instance/WP2355_r129695 “Apoptosis in:
• Microglial cells
• Hippocampal neurons
• Prostate cancer cells” with graphId d5a90
• http://classic.wikipathways.org/instance/WP2355_r129695 “EN” with graphId d7a64
• http://classic.wikipathways.org/instance/WP2355_r129695 “PM” with graphId bb0c7
• http://classic.wikipathways.org/instance/WP2355_r129695 “Proinflammatory effect in leukocytes “ with graphId ca0b5
• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId d8d3e
• http://classic.wikipathways.org/instance/WP2355_r129695 “NU” with graphId e4655
• http://classic.wikipathways.org/instance/WP2355_r129695 “EN” with graphId afd79
• http://classic.wikipathways.org/instance/WP2355_r129695 “PM” with graphId c6f94
• http://classic.wikipathways.org/instance/WP2355_r129695 “NU” with graphId f3537
• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId b26aa
• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId d848a
• http://classic.wikipathways.org/instance/WP2355_r129695 “PM” with graphId ef59c
• http://classic.wikipathways.org/instance/WP2355_r129695 “Increased gap junctions Neuroprotection “ with graphId fb0a8
• http://classic.wikipathways.org/instance/WP2355_r129695 “NU” with graphId e4b69
• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId a818f
• http://classic.wikipathways.org/instance/WP2355_r129695 “Fatty acid oxidation” with graphId c9629
• http://classic.wikipathways.org/instance/WP2355_r129695 “Dehydroepiandrosterone sulfate and cortisol production” with graphId ff51b
• http://classic.wikipathways.org/instance/WP2355_r129695 “NU” with graphId a5cd4
• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId b1ea2
• http://classic.wikipathways.org/instance/WP2355_r129695 “Keratinocyte differentiation and proliferation” with graphId becfd
• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId b8acc
• http://classic.wikipathways.org/instance/WP2355_r129695 “NU” with graphId efe55
• http://classic.wikipathways.org/instance/WP2355_r129695 “Inhibits progesterone synthesis in placental trophoblasts” with graphId bae89
• http://classic.wikipathways.org/instance/WP2355_r129695 “NU” with graphId a2afa
• http://classic.wikipathways.org/instance/WP2355_r129695 “CY” with graphId a89b7
• http://classic.wikipathways.org/instance/WP2355_r129695 “Pro-inflammatory cytokine production” with graphId af6ef
• http://classic.wikipathways.org/instance/WP2355_r129695 “Degradation and dissociation of NFKBs” with graphId fbfa6
• http://classic.wikipathways.org/instance/WP2355_r129695 “Cell survival” with graphId dfaeb
• http://classic.wikipathways.org/instance/WP2355_r129695 “Recycling of receptors” with graphId e0c36

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP2355_r129695 ‘Corticotropin-releasing hormone signaling’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference