wikipathways-collection

WikiPathways WP2324

• WikiPathways: WP2324 (classic)
• Species: Homo sapiens
• Scholia: WP2324

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 16
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 32
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 16

• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/e944f (AGE-modified albumin)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/c7e07 (AGEs)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/e1bbd (AGEs)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/f3e9c (AGEs)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/cd9bc (CEL)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/f0655 (CML)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/b81b8 (CML-Collagen)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/b55fe (Glyc-FBS)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/e9070 (H2O2)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/dc564 (Ligand)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/c1fae (NO)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/af7f7 (NOX)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/d6ab6 (Na+ K+ ATPase)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/abec4 (PLC)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/ff1e5 (Pentosidine)
• http://classic.wikipathways.org/instance/WP2324_r126372 http://rdf.wikipathways.org/Pathway/WP2324_r126372/DataNode/c402d (Protein)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 32

• http://classic.wikipathways.org/instance/WP2324_r126372 “Cell proliferation” with graphId cd87f
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId d273b
• http://classic.wikipathways.org/instance/WP2324_r126372 “Neurite” with graphId af32c
• http://classic.wikipathways.org/instance/WP2324_r126372 “NU” with graphId f998a
• http://classic.wikipathways.org/instance/WP2324_r126372 “NU” with graphId bac70
• http://classic.wikipathways.org/instance/WP2324_r126372 “Inhibition of” with graphId a8ec1
• http://classic.wikipathways.org/instance/WP2324_r126372 “Mitochondrial” with graphId c3546
• http://classic.wikipathways.org/instance/WP2324_r126372 “Apoptosis in” with graphId cdfc1
• http://classic.wikipathways.org/instance/WP2324_r126372 “NU” with graphId b99a5
• http://classic.wikipathways.org/instance/WP2324_r126372 “NU” with graphId a4bae
• http://classic.wikipathways.org/instance/WP2324_r126372 “NU” with graphId d1839
• http://classic.wikipathways.org/instance/WP2324_r126372 “Neutrophil” with graphId f2565
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId db510
• http://classic.wikipathways.org/instance/WP2324_r126372 “Receptor” with graphId dd190
• http://classic.wikipathways.org/instance/WP2324_r126372 “Inhibition of” with graphId c30ee
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId ed901
• http://classic.wikipathways.org/instance/WP2324_r126372 “Degradation” with graphId eb263
• http://classic.wikipathways.org/instance/WP2324_r126372 “Osteogenic” with graphId e09d1
• http://classic.wikipathways.org/instance/WP2324_r126372 “Autophagy in vascular smooth muscle cells” with graphId a24a7
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId bb579
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId e2bf8
• http://classic.wikipathways.org/instance/WP2324_r126372 “Internalization” with graphId ff7e3
• http://classic.wikipathways.org/instance/WP2324_r126372 “NU” with graphId b1707
• http://classic.wikipathways.org/instance/WP2324_r126372 “Renal cellular hypertrophy” with graphId d61bb
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId f28f7
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId b4e0e
• http://classic.wikipathways.org/instance/WP2324_r126372 “MT” with graphId bb3a5
• http://classic.wikipathways.org/instance/WP2324_r126372 “CY” with graphId c7faf
• http://classic.wikipathways.org/instance/WP2324_r126372 “NU” with graphId c3bdd
• http://classic.wikipathways.org/instance/WP2324_r126372 “Rearrangement of the actin cytoskeleton” with graphId af73d
• http://classic.wikipathways.org/instance/WP2324_r126372 “Apoptosis in” with graphId b547b
• http://classic.wikipathways.org/instance/WP2324_r126372 “Endothelial cell” with graphId b3974

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP2324_r126372 ‘AGE/RAGE pathway’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference