wikipathways-collection
WikiPathways WP2263
- WikiPathways: WP2263 (classic)
- Species: Homo sapiens
- Scholia: WP2263
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .x we found 1 problem(s):
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 15 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .. all OK!
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 117
- Number of assertions: 235
- Number of fails: 3
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 10
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/ca45a (ASK1)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/b0b3f (BACH1)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/c8153 (OCT1)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/cb169 (PUMA)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/c7f71 (Translation)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/fec1f (p13K)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/a04be (p14)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/eb86b (p15)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/eb573 (p21)
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/fec09 (p27)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Datanodes of unknown type
The following DataNodes have Unknown @Type: 1
- http://classic.wikipathways.org/instance/WP2263_r134233 http://rdf.wikipathways.org/Pathway/WP2263_r134233/DataNode/c7f71 (Translation)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes
Interactions with Labels
Interactions found that involve Labels: 6
- http://classic.wikipathways.org/instance/WP2263_r134233 “Anoikis” with graphId b5f77
- http://classic.wikipathways.org/instance/WP2263_r134233 “CDC42 pathway” with graphId dbb55
- http://classic.wikipathways.org/instance/WP2263_r134233 “Transcription” with graphId e72d6
- http://classic.wikipathways.org/instance/WP2263_r134233 “Transcription of COX2” with graphId fd156
- http://classic.wikipathways.org/instance/WP2263_r134233 “RAC1 pathway” with graphId a6f48
- http://classic.wikipathways.org/instance/WP2263_r134233 “Trancription” with graphId b3a68
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels