wikipathways-collection

WikiPathways WP2234

• WikiPathways: WP2234 (classic)
• Species: Caenorhabditis elegans

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

• http://classic.wikipathways.org/instance/WP2234_r135387 http://rdf.wikipathways.org/Pathway/WP2234_r135387/DataNode/f53ba (DFK-2 protein kinase D)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 6

http://classic.wikipathways.org/instance/WP2234_r135387 "p38 MAPK module" with graphId f5b96
http://classic.wikipathways.org/instance/WP2234_r135387 "PIP2" with graphId d0cfc
http://classic.wikipathways.org/instance/WP2234_r135387 "DAG" with graphId ef343
http://classic.wikipathways.org/instance/WP2234_r135387 "DAG" with graphId b5de4
http://classic.wikipathways.org/instance/WP2234_r135387 "PIP2" with graphId bf1b0
http://classic.wikipathways.org/instance/WP2234_r135387 "PA" with graphId e1ca8

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP2234_r135387 http://rdf.wikipathways.org/Pathway/WP2234_r135387/WP/Interaction/ide68c72ed "DAF-16" (https://identifiers.org/ensembl/WBGene00000912) and 
DAF-16" (https://identifiers.org/ensembl/WBGene00000912)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations