wikipathways-collection

WikiPathways WP2233

• WikiPathways: WP2233 (classic)
• Species: Caenorhabditis elegans

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 19
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP2233_r134215 http://rdf.wikipathways.org/Pathway/WP2233_r134215/DataNode/c0bca (SNF-12)
• http://classic.wikipathways.org/instance/WP2233_r134215 http://rdf.wikipathways.org/Pathway/WP2233_r134215/DataNode/f80a0 (SNF-12)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 19

http://classic.wikipathways.org/instance/WP2233_r134215 STA-2 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 RACK-1(Gbeta) with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 DCAR-1 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 TPA-1(PKC delta) with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 NIPI-3 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 PMK-1 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 PLC-3 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 PKC-3 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 SEK-1 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 DBL-1 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 GPA-12(Galpha) with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 cnc-2 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 SMA-3 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 TIR-1B with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 ELT-3 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 NIPI-4 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 nlp-29 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 NSY-1 with datasource WormBase
http://classic.wikipathways.org/instance/WP2233_r134215 EGL-8 (PLCbeta) with datasource WormBase

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping