wikipathways-collection

WikiPathways WP2229

• WikiPathways: WP2229 (classic)
• Species: Caenorhabditis elegans

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 15
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 6

http://classic.wikipathways.org/instance/WP2229_r135408 "high Ca2+" with graphId fee84
http://classic.wikipathways.org/instance/WP2229_r135408 "high Ca2+" with graphId f09b7
http://classic.wikipathways.org/instance/WP2229_r135408 "MAP Kinase" with graphId d7cf9
http://classic.wikipathways.org/instance/WP2229_r135408 "high Ca2+" with graphId e4761
http://classic.wikipathways.org/instance/WP2229_r135408 "MAP Kinase" with graphId bc1f1
http://classic.wikipathways.org/instance/WP2229_r135408 "MAP Kinase" with graphId f6f50

Possible MIM translocation

Interactions between identical nodes: 15

http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/idd956d60f "SRSX-3" (https://identifiers.org/ensembl/WBGene00022408) and 
SRSX-3" (https://identifiers.org/ensembl/WBGene00022408)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/e0672 "SRSX-3" (https://identifiers.org/ensembl/WBGene00022408) and 
SRSX-3" (https://identifiers.org/ensembl/WBGene00022408)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/ddc7f "STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/ddc7f "STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/ddc7f "unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/ddc7f "unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/a665e "STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/a665e "STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/a665e "unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/a665e "unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/f5bdc "STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/f5bdc "STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/f5bdc "unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/f5bdc "unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070) and 
unstable  STR-2" (https://identifiers.org/ensembl/WBGene00006070)
http://classic.wikipathways.org/instance/WP2229_r135408 http://rdf.wikipathways.org/Pathway/WP2229_r135408/WP/Interaction/fe6ed "SRSX-3" (https://identifiers.org/ensembl/WBGene00022408) and 
SRSX-3" (https://identifiers.org/ensembl/WBGene00022408)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations