wikipathways-collection

WikiPathways WP2152

• WikiPathways: WP2152 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 8
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/DataNode/fd09f (Apoptosis)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/DataNode/e633d (NF-kappa-B)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/DataNode/b5b3d (PLC-gamma)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/DataNode/dba22 (Response Element)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/DataNode/eedb9 (SH2B)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 8

• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/idd102b619 “Plasminogen” (https://identifiers.org/ensembl/ENSMUSG00000059481) and Plasminogen” (https://identifiers.org/ensembl/ENSMUSG00000059481)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/idd102b619 “Plasminogen” (https://identifiers.org/ensembl/ENSMUSG00000059481) and Plasmin” (https://identifiers.org/ensembl/ENSMUSG00000059481)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/idd102b619 “Plasmin” (https://identifiers.org/ensembl/ENSMUSG00000059481) and Plasminogen” (https://identifiers.org/ensembl/ENSMUSG00000059481)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/idd102b619 “Plasmin” (https://identifiers.org/ensembl/ENSMUSG00000059481) and Plasmin” (https://identifiers.org/ensembl/ENSMUSG00000059481)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/id34395b15 “Pro-Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482) and Pro-Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/id34395b15 “Pro-Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482) and Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/id34395b15 “Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482) and Pro-Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482)
• http://classic.wikipathways.org/instance/WP2152_r120589 http://rdf.wikipathways.org/Pathway/WP2152_r120589/WP/Interaction/id34395b15 “Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482) and Bdnf” (https://identifiers.org/ensembl/ENSMUSG00000048482)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations