wikipathways-collection

WikiPathways WP2118

• WikiPathways: WP2118 (classic)
• Species: Homo sapiens
• Scholia: WP2118

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 13
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 5
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 3

Fails

Interactions with Labels

Interactions found that involve Labels: 13

• http://classic.wikipathways.org/instance/WP2118_r119252 “Inflammation” with graphId a6290
• http://classic.wikipathways.org/instance/WP2118_r119252 “Replacement of RV (later LV) myocardium by fibrofatty tissue” with graphId c8edf
• http://classic.wikipathways.org/instance/WP2118_r119252 “Apoptosis and/or necrosis” with graphId e4f94
• http://classic.wikipathways.org/instance/WP2118_r119252 “Distribution of normal excitation-contraction coupling” with graphId a818a
• http://classic.wikipathways.org/instance/WP2118_r119252 “Competition between plakoglobin and beta-catenin” with graphId fb65a
• http://classic.wikipathways.org/instance/WP2118_r119252 “Inhibition of Wnt/beta-catenin signaling” with graphId a235c
• http://classic.wikipathways.org/instance/WP2118_r119252 “Cardiomyocyte detatchment” with graphId ad0da
• http://classic.wikipathways.org/instance/WP2118_r119252 “Environmental factors, autonomic nervous system” with graphId eb335
• http://classic.wikipathways.org/instance/WP2118_r119252 “Symptomatic arrhythmias” with graphId bfc83
• http://classic.wikipathways.org/instance/WP2118_r119252 “Adipo-and fibrogenesis” with graphId fca08
• http://classic.wikipathways.org/instance/WP2118_r119252 “Imbalance of calcium homeostasis” with graphId bd99f
• http://classic.wikipathways.org/instance/WP2118_r119252 “RV (and LV) failure” with graphId ce9c1
• http://classic.wikipathways.org/instance/WP2118_r119252 “Hyperactivation or hypersensitivity to calcium” with graphId d0a69

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 5

• http://classic.wikipathways.org/instance/WP2118_r119252 http://rdf.wikipathways.org/Pathway/WP2118_r119252/WP/Interaction/id61b0d9c7 “Calcium” (https://identifiers.org/kegg.compound/C00076) and Calcium” (https://identifiers.org/kegg.compound/C00076)
• http://classic.wikipathways.org/instance/WP2118_r119252 http://rdf.wikipathways.org/Pathway/WP2118_r119252/WP/Interaction/fa370 “Calcium” (https://identifiers.org/kegg.compound/C00076) and Calcium” (https://identifiers.org/kegg.compound/C00076)
• http://classic.wikipathways.org/instance/WP2118_r119252 http://rdf.wikipathways.org/Pathway/WP2118_r119252/WP/Interaction/idb803aede “Sodium” (https://identifiers.org/kegg.compound/C01330) and Sodium” (https://identifiers.org/kegg.compound/C01330)
• http://classic.wikipathways.org/instance/WP2118_r119252 http://rdf.wikipathways.org/Pathway/WP2118_r119252/WP/Interaction/idc187ff81 “Calcium” (https://identifiers.org/kegg.compound/C00076) and Calcium” (https://identifiers.org/kegg.compound/C00076)
• http://classic.wikipathways.org/instance/WP2118_r119252 http://rdf.wikipathways.org/Pathway/WP2118_r119252/WP/Interaction/idff24f0c “Calcium” (https://identifiers.org/kegg.compound/C00076) and Calcium” (https://identifiers.org/kegg.compound/C00076)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP2118_r119252 ‘Arrhythmogenic right ventricular cardiomyopathy’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference