wikipathways-collection

WikiPathways WP1965

• WikiPathways: WP1965 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 9
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP1965_r126412 http://rdf.wikipathways.org/Pathway/WP1965_r126412/DataNode/d9517 (ERK)
• http://classic.wikipathways.org/instance/WP1965_r126412 http://rdf.wikipathways.org/Pathway/WP1965_r126412/DataNode/afce5 (MEK)
• http://classic.wikipathways.org/instance/WP1965_r126412 http://rdf.wikipathways.org/Pathway/WP1965_r126412/DataNode/bfba5 (VEGFR-1)
• http://classic.wikipathways.org/instance/WP1965_r126412 http://rdf.wikipathways.org/Pathway/WP1965_r126412/DataNode/fbeac (VEGFR-2)
• http://classic.wikipathways.org/instance/WP1965_r126412 http://rdf.wikipathways.org/Pathway/WP1965_r126412/DataNode/e0159 (VEGFR-3)
• http://classic.wikipathways.org/instance/WP1965_r126412 http://rdf.wikipathways.org/Pathway/WP1965_r126412/DataNode/ac12c (cPLA2)
• http://classic.wikipathways.org/instance/WP1965_r126412 http://rdf.wikipathways.org/Pathway/WP1965_r126412/DataNode/cda3c (sVEGFR-1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 9

http://classic.wikipathways.org/instance/WP1965_r126412 "Actin Reorganisation" with graphId c0197
http://classic.wikipathways.org/instance/WP1965_r126412 "PGi2 Production" with graphId ddeaf
http://classic.wikipathways.org/instance/WP1965_r126412 "Gene Transcription" with graphId e8f28
http://classic.wikipathways.org/instance/WP1965_r126412 "Focal adhesion Turn Over" with graphId ef0e1
http://classic.wikipathways.org/instance/WP1965_r126412 "Migration" with graphId f8a3a
http://classic.wikipathways.org/instance/WP1965_r126412 "Ca2+" with graphId feb6f
http://classic.wikipathways.org/instance/WP1965_r126412 "NO" with graphId db4a9
http://classic.wikipathways.org/instance/WP1965_r126412 "Permeability" with graphId c14c9
http://classic.wikipathways.org/instance/WP1965_r126412 "Survival" with graphId c39df