wikipathways-collection

WikiPathways WP1946

• WikiPathways: WP1946 (classic)
• Species: Homo sapiens
• Scholia: WP1946

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/DataNode/f31a7 (Gluconeogenesis)
• http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/DataNode/b6c39 (Glycogenesis)
• http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/DataNode/fa452 (Glycogenesis)
• http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/DataNode/b4e67 (Glycogenolysis)
• http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/DataNode/e5e93 (Glycogenolysis)
• http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/DataNode/d403b (Glycolosis)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 3

http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/WP/Interaction/id78502cf0 "D-Fructose-6-phosphate" (https://identifiers.org/chebi/CHEBI:15946) and 
Fructose 6P" (https://identifiers.org/hmdb/HMDB0000124)
http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/WP/Interaction/id78502cf0 "Fructose 6P" (https://identifiers.org/chebi/CHEBI:15946) and 
Fructose 6P" (https://identifiers.org/hmdb/HMDB0000124)
http://classic.wikipathways.org/instance/WP1946_r126409 http://rdf.wikipathways.org/Pathway/WP1946_r126409/WP/Interaction/id37235231 "G3P" (https://identifiers.org/chebi/CHEBI:17138) and 
G3P" (https://identifiers.org/hmdb/HMDB0001112)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP1946_r126409 ‘Cori cycle’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference