wikipathways-collection

WikiPathways WP188

• WikiPathways: WP188 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 38
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 38

http://classic.wikipathways.org/instance/WP188_r116964 Myl6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Birc2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Pik3cb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Ppp1r12a with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Fn1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Araf with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Birc3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Farp2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Rhob with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Col3a1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Col5a2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Tnxb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Pik3r4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Pdgfb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Itgb7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Pdgfd with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Itga5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Parvb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Ccnd3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Rac2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Mapk6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Col5a3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Igf1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Lama1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Itga7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Rock2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Mapk12 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Map2k2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Vav1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Map2k5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Lamb2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Pip5k1c with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Actn1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Col4a4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Rap1b with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Col2a1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Bcl2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP188_r116964 Vegfa with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping