wikipathways-collection
WikiPathways WP173
- WikiPathways: WP173 (classic)
- Species: Rattus norvegicus
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests: all 5 tests OK!
- EnsemblTests: all 4 tests OK!
- GeneTests
- entrezGeneIdentifiersNotNumber: .. all OK!
- affyProbeIdentifiersNotCorrect: .. all OK!
- outdatedIdentifiers: …. all OK!
- nonNumericHGNCAccessionNumbers: .. all OK!
- genesWithoutEnsemblMapping: .x we found 1 problem(s):
- GeneralTests: all 15 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 8 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 15 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 8 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 120
- Number of assertions: 241
- Number of fails: 1
Fails
Genes with identifier but no Ensembl identifier mapping
The following genes with an identifier have been found but that do not have a mapping to Ensembl: 6
http://classic.wikipathways.org/instance/WP173_r137018 Ugt1a6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP173_r137018 Gclc with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP173_r137018 Maoa with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP173_r137018 Txnrd1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP173_r137018 Txn2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP173_r137018 Sp1 with datasource Entrez Gene
More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping