wikipathways-collection

WikiPathways WP170

• WikiPathways: WP170 (classic)
• Species: Homo sapiens
• Scholia: WP170

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 38
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 38

http://classic.wikipathways.org/instance/WP170_r137004 PPARA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RXRB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 PPARD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR1H2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 VDR with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 THRA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RARG with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 ROR1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR3C1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR5A1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR1H3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR5A2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RORA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 PPARG with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RARB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR1I3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RXRA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RXRG with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 ESRRA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 THRB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 AR with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RORC with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 ESRRB with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR4A1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR2F2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR2C2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR2F1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 ESR2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR0B1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 RARA with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR1I2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR2E1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR4A2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR2F6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 ESR1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 NR1D2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 HNF4A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP170_r137004 PGR with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping