wikipathways-collection

WikiPathways WP1601

• WikiPathways: WP1601 (classic)
• Species: Homo sapiens
• Scholia: WP1601

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 19
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/DataNode/b4e64 (5-hydroxytegafur)
• http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/DataNode/a6a61 (FUR)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP1601_r126380 "DNA Incorporation" with graphId f5b57
http://classic.wikipathways.org/instance/WP1601_r126380 "RNA Incorporation" with graphId aa8b2

Possible MIM translocation

Interactions between identical nodes: 19

http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/a56c3 "FUTP" (https://identifiers.org/pubchem.compound/10255482) and 
FUTP" (https://identifiers.org/pubchem.compound/10255482)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id12aaa43 "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id12aaa43 "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id12aaa43 "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id12aaa43 "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/idc86511af "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/idc86511af "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/idc86511af "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/idc86511af "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/idc4a8efbd "FdUMP" (https://identifiers.org/pubchem.compound/8642) and 
FdUMP" (https://identifiers.org/pubchem.compound/8642)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/d6b11 "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/d6b11 "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/d6b11 "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/d6b11 "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id398367f4 "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id398367f4 "5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id398367f4 "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-fluorouracil (5-FU)" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/id398367f4 "5-FU" (https://identifiers.org/chebi/CHEBI:46345) and 
5-FU" (https://identifiers.org/chebi/CHEBI:46345)
http://classic.wikipathways.org/instance/WP1601_r126380 http://rdf.wikipathways.org/Pathway/WP1601_r126380/WP/Interaction/b4726 "FdUTP" (https://identifiers.org/pubchem.compound/503023) and 
FdUTP" (https://identifiers.org/pubchem.compound/503023)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations