wikipathways-collection

WikiPathways WP1567

• WikiPathways: WP1567 (classic)
• Species: Mycobacterium tuberculosis

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 22
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

• http://classic.wikipathways.org/instance/WP1567_r120958 http://rdf.wikipathways.org/Pathway/WP1567_r120958/DataNode/b1266 (Carbon fixation in photosynthetic organisms)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 22

http://classic.wikipathways.org/instance/WP1567_r120958 aceE with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 oxidoreductase with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 pckA with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 pdhA with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 sugar kinase (EC:2.7.-.-) with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 lpdA with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 ppgK with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 pdhB with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 adhE1 with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 aldC with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 pgi with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 lpd with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 aldA with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 adhB with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 aldehyde dehydrogenase (EC:1.2.1.3) with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 aldehyde dehydrogenase (EC:1.2.1.-) with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 adh with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 dehydrogenase with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 pdhC with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 adhA with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 acs with datasource TubercuList
http://classic.wikipathways.org/instance/WP1567_r120958 adhD with datasource NCBI Protein

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping