wikipathways-collection

WikiPathways WP1541

• WikiPathways: WP1541 (classic)
• Species: Homo sapiens
• Scholia: WP1541

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 4
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP1541_r126394 http://rdf.wikipathways.org/Pathway/WP1541_r126394/DataNode/a7bd9 (Unknown Transcription Factors)
• http://classic.wikipathways.org/instance/WP1541_r126394 http://rdf.wikipathways.org/Pathway/WP1541_r126394/DataNode/a8699 (Unknown Transcription Factors)
• http://classic.wikipathways.org/instance/WP1541_r126394 http://rdf.wikipathways.org/Pathway/WP1541_r126394/DataNode/dfb97 (Unknown Transcription Factors)
• http://classic.wikipathways.org/instance/WP1541_r126394 http://rdf.wikipathways.org/Pathway/WP1541_r126394/DataNode/f439d (Unknown Transcription Factors)
• http://classic.wikipathways.org/instance/WP1541_r126394 http://rdf.wikipathways.org/Pathway/WP1541_r126394/DataNode/f8e2b (Unknown Transcription Factors)
• http://classic.wikipathways.org/instance/WP1541_r126394 http://rdf.wikipathways.org/Pathway/WP1541_r126394/DataNode/f9209 (Unknown Transcription Factors)
• http://classic.wikipathways.org/instance/WP1541_r126394 http://rdf.wikipathways.org/Pathway/WP1541_r126394/DataNode/bf56f (Unknown Transcription Factors )

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 4

http://classic.wikipathways.org/instance/WP1541_r126394 "Transcription Nuclear 
Encoded Genes" with graphId f5bb6
http://classic.wikipathways.org/instance/WP1541_r126394 "Muscular atrophy" with graphId ec6c0
http://classic.wikipathways.org/instance/WP1541_r126394 "Genes of mitochondrial 
fatty acid oxidation
enzymes" with graphId d0778
http://classic.wikipathways.org/instance/WP1541_r126394 "Post-transcriptional modification" with graphId e644a

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP1541_r126394 ‘Energy metabolism’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference