wikipathways-collection

WikiPathways WP1538

• WikiPathways: WP1538 (classic)
• Species: Arabidopsis thaliana

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 20
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 20

• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/c7d28 (CHI)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/cfae2 (CHI)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/a7b51 (CHS)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/b9303 (CHS)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/cec52 (CHS)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/f9889 (F3H)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/a29e2 (Kae-3-O-Glu)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/b5a61 (Kae-3-O-Glu-Rha)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/f8cc9 (Kae-3-O-Glu-Rha, 7-OGlu)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/dd61a (Kae-3-O-diGlu)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/c582a (Que-3-O-Glu)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/dc6d7 (Que-3-O-Glu-Rha)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/d7bb3 (Que-3-O-Glu-Rha, 7-OGlu)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/f9e98 (Que-3-O-diGlu)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/e8a2f (dihydrotricetin)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/e7997 (eriodictyol chalcone)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/abc66 (homoeriodictyol chalcone)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/e1527 (leucodelphinidin)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/f85c8 (malvidin)
• http://classic.wikipathways.org/instance/WP1538_r126393 http://rdf.wikipathways.org/Pathway/WP1538_r126393/DataNode/a92f8 (petunidin)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP1538_r126393 ‘Flavonoid biosynthesis’ in Arabidopsis thaliana has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference