wikipathways-collection

WikiPathways WP1496

• WikiPathways: WP1496 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 15
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 15

http://classic.wikipathways.org/instance/WP1496_r126385 "Stress" with graphId cefba
http://classic.wikipathways.org/instance/WP1496_r126385 "Formation of apoptotic bodies" with graphId ff4b1
http://classic.wikipathways.org/instance/WP1496_r126385 "ROS" with graphId a2edb
http://classic.wikipathways.org/instance/WP1496_r126385 "Liver regeneration" with graphId d909b
http://classic.wikipathways.org/instance/WP1496_r126385 "Proteasome" with graphId fdb4c
http://classic.wikipathways.org/instance/WP1496_r126385 "Cell survival" with graphId c76e1
http://classic.wikipathways.org/instance/WP1496_r126385 "Nf-kB pathway" with graphId a2a36
http://classic.wikipathways.org/instance/WP1496_r126385 "GSH" with graphId a96a6
http://classic.wikipathways.org/instance/WP1496_r126385 "Cell lysis and clearance" with graphId b0ce2
http://classic.wikipathways.org/instance/WP1496_r126385 "C3-convertase" with graphId ae614
http://classic.wikipathways.org/instance/WP1496_r126385 "ROS" with graphId c1ae6
http://classic.wikipathways.org/instance/WP1496_r126385 "Complement activation" with graphId a59be
http://classic.wikipathways.org/instance/WP1496_r126385 "Muscle contraction,
Chemotaxis,
Phagocyte recruitment,
Inflammation etc" with graphId a1f94
http://classic.wikipathways.org/instance/WP1496_r126385 "C5a" with graphId bc7a9
http://classic.wikipathways.org/instance/WP1496_r126385 "Induction of antioxidant genes" with graphId aa82a

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP1496_r126385 ‘Oxidative damage response’ in Mus musculus has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference