wikipathways-collection

WikiPathways WP1461

• WikiPathways: WP1461 (classic)
• Species: Arabidopsis thaliana

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 8
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 8

• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/a4c77 (ATP Synthase)
• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/addf7 (Ferredoxin)
• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/c15c0 (Ferredoxin-NADP reductase)
• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/cc609 (P700)
• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/f0853 (Plastocyanin)
• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/f0811 (RbcL)
• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/f6fe3 (Triose-P)
• http://classic.wikipathways.org/instance/WP1461_r126352 http://rdf.wikipathways.org/Pathway/WP1461_r126352/DataNode/e6dee (glycoxylate)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP1461_r126352 "Light" with graphId b20ce
http://classic.wikipathways.org/instance/WP1461_r126352 "Light" with graphId f00e1