wikipathways-collection

WikiPathways WP1453

• WikiPathways: WP1453 (classic)
• Species: Caenorhabditis elegans

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 23
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 1

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 23

http://classic.wikipathways.org/instance/WP1453_r135405 "WNT 
Pathway" with graphId a5ddf
http://classic.wikipathways.org/instance/WP1453_r135405 "Generation of
the adult cells" with graphId dec27
http://classic.wikipathways.org/instance/WP1453_r135405 "Vulval precursor
patterning" with graphId c5974
http://classic.wikipathways.org/instance/WP1453_r135405 "Vulval precursor patterning:

A signal from the gonad and 
signaling among the VPCs 
specifies three VPCs to generate 
vulval cells. Two types of vulval 
lineages, 1° and 2°,  generate 
distinct sets of vulval cell progeny. 
Uninduced VPCs generate a 3° 
lineage, which make cells that fuse 
with the epidermis hyp7 cell. The 
VPCs adopt their fates in a precise 
spatial pattern of 3°-3°-2°-1°-2°-3°." with graphId a19d2
http://classic.wikipathways.org/instance/WP1453_r135405 "Generation of the anchor cell:

Two somatic gonadal cells 
are specified to become the 
anchor cell through an AC/UV 
decision." with graphId fd681
http://classic.wikipathways.org/instance/WP1453_r135405 "Morphogenesis of the vulva:

The seven types of vulval 
cells invaginate, and 
sequentially form seven 
distinct toroids, connects 
to the uterus, and everts as 
the hermaphrodite molts 
to adulthood. " with graphId c26a2
http://classic.wikipathways.org/instance/WP1453_r135405 "Anchor cell invasion: 

The anchor cell extends 
a process to the center of 
the vulF cells and forms a 
hole in the epidermis." with graphId eae09
http://classic.wikipathways.org/instance/WP1453_r135405 "L2" with graphId c3fa8
http://classic.wikipathways.org/instance/WP1453_r135405 "L3" with graphId b147c
http://classic.wikipathways.org/instance/WP1453_r135405 "Fusion with 
hyp7" with graphId cef9d
http://classic.wikipathways.org/instance/WP1453_r135405 "LET-23/LET-60
signaling" with graphId dd888
http://classic.wikipathways.org/instance/WP1453_r135405 "Mid L4" with graphId daaec
http://classic.wikipathways.org/instance/WP1453_r135405 "L3 molt" with graphId ccd10
http://classic.wikipathways.org/instance/WP1453_r135405 "Generation of the adult cells:

Unique patterns of gene 
expression are established 
among 22 nuclei to generate 
distinct cell biology in cells of 
seven types vulA, vulB1, vulB2, 
vulC, VulD, vulE, and vulF, which 
will go on to make the adult vulva." with graphId b49e8
http://classic.wikipathways.org/instance/WP1453_r135405 "Anchor cell 
invasion" with graphId d94ca
http://classic.wikipathways.org/instance/WP1453_r135405 "Uterine patterning:

The anchor cell (AC) induces 
the six pi cells to generate
the utse cell and uv1 cells. 
The AC ultimately fuses with 
the utse cell, the uv1 cells 
attach to the vulF cells." with graphId ba551
http://classic.wikipathways.org/instance/WP1453_r135405 "L1" with graphId adf65
http://classic.wikipathways.org/instance/WP1453_r135405 "Proliferation" with graphId c7135
http://classic.wikipathways.org/instance/WP1453_r135405 "Generation 
of VPCs" with graphId e9832
http://classic.wikipathways.org/instance/WP1453_r135405 "Morphogenesis
of the vulva" with graphId d8e55
http://classic.wikipathways.org/instance/WP1453_r135405 "Responsiveness 
to LIN-3" with graphId c49a5
http://classic.wikipathways.org/instance/WP1453_r135405 "P3.p" with graphId c1cc0
http://classic.wikipathways.org/instance/WP1453_r135405 "Generation of VPCs:

Six vulval precursor cells 
(VPCs) are specified among 
the 11 Pn.p cells." with graphId aa0dd