wikipathways-collection

WikiPathways WP1386

• WikiPathways: WP1386 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 25
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 25

• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/a16 (ACTN)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/f96 (ARHGEF7)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/d07 (CAPN11)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/ac4 (CAPN5)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/b75 (CAPN6)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/e13 (CAPNS1)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/f82 (ITGA11)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/a0e (ITGA4)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/f6e (ITGA8)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/a48 (ITGAE)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/d01 (ITGAL)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/a75 (ITGAM)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/d16 (ITGAX)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/d8c (ITGB1)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/e47 (MAP2K3)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/ee2 (MYO)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/ab0 (MYO-P)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/eac (PAK3)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/c2b (PAK6)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/e6a (PI5K)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/ae6 (ROCK1)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/a4d (SOS1)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/dc1 (TNS1)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/de7 (VAV2)
• http://classic.wikipathways.org/instance/WP1386_r136993 http://rdf.wikipathways.org/Pathway/WP1386_r136993/DataNode/f05 (p110)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 8

http://classic.wikipathways.org/instance/WP1386_r136993 LOC100007176 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1386_r136993 LOC563639 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1386_r136993 LOC792354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1386_r136993 capn2l with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1386_r136993 MYLK2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1386_r136993 ITGA7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1386_r136993 LOC100151619 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1386_r136993 LOC571984 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping