wikipathways-collection

WikiPathways WP1384

• WikiPathways: WP1384 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 37
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 37

• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/c2ad6 (CCL3)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/fcdbf (CCL4)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/afd11 (CCL5)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/dfa90 (CD14)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/a6634 (CD80)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/da07a (CD86)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/c3961 (CXCL10)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/fe8d1 (CXCL11)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/f8d4c (CXCL9)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/c9960 (IFNA1)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/a75ab (IFNA10)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/df580 (IFNA13)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/c7f28 (IFNA14)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/b26f3 (IFNA16)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/be389 (IFNA17)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/b78fb (IFNA2)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/bc8f8 (IFNA21)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/c9081 (IFNA4)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/f193b (IFNA5)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/f9a8e (IFNA6)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/bb331 (IFNA7)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/aaaf8 (IFNA8)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/e4013 (IFNAR1)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/efad0 (IFNAR2)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/be792 (IFNB1)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/e2991 (IFNB1)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/ef50b (IFNB1)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/b11f5 (IL12B)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/d925f (IL6)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/eb8d2 (IL8)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/e5f41 (LBP)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/a084d (LY96)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/faee3 (MAP2K3)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/ba563 (NFKBIA)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/d5b10 (TICAM2)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/c465a (TLR4)
• http://classic.wikipathways.org/instance/WP1384_r118905 http://rdf.wikipathways.org/Pathway/WP1384_r118905/DataNode/bcc03 (TNF)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3

http://classic.wikipathways.org/instance/WP1384_r118905 LOC100004036 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1384_r118905 LOC792354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1384_r118905 tlr8a with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping